EnhancerDB
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  3. rs1772853[chr1:201280621]
Enhancers that have rs1772853[chr1:201280621]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201263092 201282279 enh12518
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Lung (PC-9) Brain (SK-N-SH) Bone (Osteoblast) Muscle (A673) Placenta Thyroid Muscle (Myoblast) Breast Thymus Heart
Transcript factors that have rs1772853[chr1:201280621]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201280140 201281328 POLR2A UCSC Txn Factor no Conserved 107856156
chr1 201280320 201287542 ZNF143 GTRD no Epithelial (MCF-7) 21363945
chr1 201280320 201287542 ZNF143 GTRD no Epithelial (MCF-7) 107856157
chr1 201280370 201280754 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21363946
chr1 201280370 201280754 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107856158
chr1 201280413 201285076 ZNF143 GTRD no Epithelial (MCF-7) 21363947
chr1 201280413 201285076 ZNF143 GTRD no Epithelial (MCF-7) 107856159
Genes associated with rs1772853[chr1:201280621], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More