EnhancerDB
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  3. rs180874761[chr5:172192550]
Enhancers that have rs180874761[chr5:172192550]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 172182745 172195855 enh8880
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Lung (PC-9) Bone (Osteoblast) Muscle (A673) Placenta Colon (HCT116) Blood (Karpas-422) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Thymus Stomach
chr5 172192263 172193766 vista50162
VISTA
Transcript factors that have rs180874761[chr5:172192550]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 172191953 172200023 POLR2A UCSC Txn Factor no Conserved 107693851
chr5 172191953 172200023 POLR2A UCSC Txn Factor no Conserved 108537470
chr5 172191953 172200023 POLR2A UCSC Txn Factor no Conserved 108537471
chr5 172191953 172200023 POLR2A UCSC Txn Factor no Conserved 108537472
chr5 172192304 172192884 ATF2 UCSC Txn Factor no Conserved 108537473
chr5 172192327 172192647 MAFK UCSC Txn Factor no Conserved 108537474
chr5 172192345 172192665 GABPA UCSC Txn Factor no Conserved 108537475
chr5 172192388 172193203 RCOR1 UCSC Txn Factor no Conserved 108537476
chr5 172192410 172192757 JUND UCSC Txn Factor no Conserved 108537477
chr5 172192536 172192553 RARA JASPAR yes 67824196
chr5 172192536 172192553 RARA JASPAR yes 70762458
Genes associated with rs180874761[chr5:172192550], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More