EnhancerDB
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  3. rs189562290[chr6:42343177]
Enhancers that have rs189562290[chr6:42343177]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 42330865 42350575 enh9115
Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Blood (OCI-LY7) Blood (GM12878) Stomach Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas Thymus Heart
Transcript factors that have rs189562290[chr6:42343177]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 42343173 42343188 TFAP2A JASPAR yes 101714471
chr6 42343173 42343188 TFAP2C JASPAR yes 101714472
chr6 42343174 42343185 TFAP2A JASPAR yes 101714473
chr6 42343174 42343185 TFAP2B JASPAR yes 101714474
chr6 42343174 42343185 TFAP2C JASPAR yes 101714475
Genes associated with rs189562290[chr6:42343177], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More