EnhancerDB
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  3. rs190053971[chr17:2719328]
Enhancers that have rs190053971[chr17:2719328]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 2712160 2721479 enh32057
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Blood (T-cell) Esophagus Astrocyte Bone (Osteoblast) Colon (HCT116) Lung (PC-9) Pancreas Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
chr17 2719284 2719546 vista23734
VISTA
Transcript factors that have rs190053971[chr17:2719328]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 2718905 2719575 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108231289
chr17 2719030 2719340 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 21739726
chr17 2719030 2719340 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 108231290
chr17 2719129 2719409 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108231291
chr17 2719136 2719426 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108231292
chr17 2719316 2719334 RARA JASPAR yes 21185528
chr17 2719316 2719334 RARA JASPAR yes 52774596
chr17 2719318 2719328 TBX21 JASPAR yes 21185529
chr17 2719318 2719328 TBX21 JASPAR yes 52774597
chr17 2719320 2719335 NR2C2 JASPAR yes 21185530
chr17 2719320 2719335 NR2C2 JASPAR yes 52774598
chr17 2719326 2719334 NR4A2 JASPAR yes 21185531
chr17 2719326 2719334 NR4A2 JASPAR yes 52774599
chr17 2719327 2719337 RORA JASPAR yes 21185532
chr17 2719327 2719337 RORA JASPAR yes 52774600
Genes associated with rs190053971[chr17:2719328], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More