EnhancerDB
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  3. rs192020385[chr1:42227959]
Enhancers that have rs192020385[chr1:42227959]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42213671 42252455 enh291
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs192020385[chr1:42227959]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42227947 42227961 RXRB JASPAR yes 28419094
chr1 42227947 42227961 RXRG JASPAR yes 28419095
chr1 42227947 42227962 NR2C2 JASPAR yes 28419096
chr1 42227956 42227974 ESR2 JASPAR yes 28419097
chr1 42227958 42227962 NFE TRANSFAC yes 28419098
Genes associated with rs192020385[chr1:42227959], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More