EnhancerDB
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  3. rs199889404[chr12:54150989]
Enhancers that have rs199889404[chr12:54150989]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 54135485 54153565 enh2372
Cervix (HeLa-S3) Ovary Blood (GM12878) Muscle (A673) Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Pancreas (Panc1) Uterus
chr12 54150655 54151094 vista13544
VISTA
Transcript factors that have rs199889404[chr12:54150989]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 54150705 54151355 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549601
chr12 54150705 54151355 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036568
chr12 54150775 54151239 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108036569
chr12 54150781 54151257 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549602
chr12 54150781 54151257 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036570
chr12 54150802 54151238 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21549603
chr12 54150802 54151238 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108036571
chr12 54150820 54151296 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549604
chr12 54150820 54151296 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036572
chr12 54150831 54151267 ELF1 UCSC Txn Factor no Conserved 108036573
chr12 54150831 54151267 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036574
chr12 54150878 54151398 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21549605
chr12 54150878 54151398 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108036575
chr12 54150894 54151224 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21549606
chr12 54150894 54151224 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108036576
chr12 54150898 54151168 ZBTB33 ENCODE Uniform TFBS no Colon (HCT116) 108036577
chr12 54150899 54151155 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21549607
chr12 54150899 54151155 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108036578
chr12 54150921 54151538 CTCF UCSC Txn Factor no Conserved 108036579
chr12 54150925 54151183 ZNF274 GTRD no Liver (HepG2) 108036580
chr12 54150929 54151313 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549608
chr12 54150929 54151313 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036581
chr12 54150932 54151208 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 108036582
chr12 54150940 54151160 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21549609
chr12 54150940 54151160 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108036583
chr12 54150943 54151219 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21549610
chr12 54150943 54151219 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108036584
chr12 54150943 54151593 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549611
chr12 54150943 54151593 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036585
chr12 54150971 54151231 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21549612
chr12 54150971 54151231 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108036586
chr12 54150973 54151203 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108036587
chr12 54150973 54151259 RAD21 UCSC Txn Factor no Conserved 108036588
chr12 54150975 54151215 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21549613
chr12 54150975 54151215 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108036589
chr12 54150976 54151266 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21549614
chr12 54150976 54151266 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108036590
chr12 54150976 54151301 ZNF143 UCSC Txn Factor no Conserved 108036591
chr12 54150982 54151000 IRF2 JASPAR yes 82410771
chr12 54150982 54151000 IRF2 JASPAR yes 121005181
chr12 54150983 54150997 BATF3 JASPAR yes 82410772
chr12 54150983 54150997 BATF3 JASPAR yes 121005182
chr12 54150983 54151227 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 21549615
chr12 54150983 54151227 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 108036592
chr12 54150986 54150997 PHOX2A JASPAR yes 82410773
chr12 54150986 54150997 PROP1 JASPAR yes 82410774
chr12 54150986 54150997 PHOX2A JASPAR yes 121005183
chr12 54150986 54150997 PROP1 JASPAR yes 121005184
chr12 54150987 54150992 H4TF1 TRANSFAC yes 82410775
chr12 54150987 54150992 H4TF1 TRANSFAC yes 121005185
chr12 54150987 54151001 IRF8 JASPAR yes 82410776
chr12 54150987 54151001 IRF8 JASPAR yes 121005186
chr12 54150988 54151278 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108036593
Genes associated with rs199889404[chr12:54150989], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More