EnhancerDB
  1. Home
  2. SNP
  3. rs200519790[chr1:28404149]
Enhancers that have rs200519790[chr1:28404149]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 28387565 28408035 enh180
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Prostate (RWPE1) Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Colon (HCT116) Thyroid Peripheral Blood (MM.1S) Blood (Karpas-422) Heart
Transcript factors that have rs200519790[chr1:28404149]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 28404142 28404156 TCF7L2 JASPAR yes 27738182
chr1 28404143 28404158 FOXP1 JASPAR yes 27738183
chr1 28404143 28404164 IRF1 JASPAR yes 27738184
chr1 28404144 28404157 POU2F2 JASPAR yes 27738185
chr1 28404148 28404163 FOXP1 JASPAR yes 27738186
chr1 28404149 28404170 IRF1 JASPAR yes 27738187
Genes associated with rs200519790[chr1:28404149], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More