EnhancerDB
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  3. rs2016887[chr1:42232342]
Enhancers that have rs2016887[chr1:42232342]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42213671 42252455 enh291
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs2016887[chr1:42232342]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42232338 42232348 ID4 JASPAR yes 28419683
chr1 42232338 42232348 TCF3 JASPAR yes 28419684
chr1 42232338 42232348 TCF4 JASPAR yes 28419685
chr1 42232339 42232348 SNAI2 JASPAR yes 28419686
chr1 42232339 42232350 GCM1 JASPAR yes 28419687
chr1 42232340 42232345 USF2 TRANSFAC yes 28419688
Genes associated with rs2016887[chr1:42232342], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More