EnhancerDB
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Enhancers that have rs2052425[chr12:109003430]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 108997229 109015819 enh14971
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (T-cell) Stomach Epithelial (MCF-7) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673)
chr12 109003329 109003729 vista14818
VISTA
Transcript factors that have rs2052425[chr12:109003430]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109003199 109003719 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570960
chr12 109003199 109003719 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056856
chr12 109003201 109003797 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570961
chr12 109003201 109003797 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056857
chr12 109003272 109003552 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570962
chr12 109003272 109003552 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056858
chr12 109003274 109003538 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570963
chr12 109003274 109003538 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056859
chr12 109003279 109003559 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570964
chr12 109003279 109003559 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056860
chr12 109003283 109003459 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570965
chr12 109003283 109003459 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056861
chr12 109003290 109003559 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570966
chr12 109003290 109003559 RUNX3 UCSC Txn Factor no Conserved 108056862
chr12 109003290 109003559 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056863
chr12 109003294 109003629 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570967
chr12 109003294 109003629 TCF3 UCSC Txn Factor no Conserved 108056864
chr12 109003294 109003629 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056865
chr12 109003300 109003618 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570968
chr12 109003300 109003618 TCF12 UCSC Txn Factor no Conserved 108056866
chr12 109003300 109003618 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056867
chr12 109003361 109003651 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570969
chr12 109003361 109003651 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056868
chr12 109003362 109003538 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570970
chr12 109003362 109003538 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056869
chr12 109003403 109003513 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570971
chr12 109003403 109003513 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056870
chr12 109003415 109003619 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108056871
chr12 109003418 109003551 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21570972
chr12 109003418 109003551 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108056872
chr12 109003421 109003435 PLAG1 JASPAR yes 82473215
chr12 109003421 109003435 PLAG1 JASPAR yes 123606272
Genes associated with rs2052425[chr12:109003430], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More