EnhancerDB
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  3. rs2140558[chr1:200261488]
Enhancers that have rs2140558[chr1:200261488]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200249825 200279179 enh867
Prostate (PC-3) Liver (HepG2) Blood (OCI-LY7) Blood (GM12878) Stomach Placenta Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs2140558[chr1:200261488]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200260598 200261516 ZNF274 GTRD no Liver (HepG2) 21362808
chr1 200261472 200261488 POU4F2 JASPAR yes 34430195
chr1 200261472 200261488 POU4F3 JASPAR yes 34430196
chr1 200261473 200261489 POU4F3 JASPAR yes 34430201
chr1 200261475 200261489 POU4F1 JASPAR yes 34430203
chr1 200261475 200261490 HNF1A JASPAR yes 34430204
chr1 200261476 200261489 HNF1B JASPAR yes 34430205
chr1 200261476 200261490 POU4F1 JASPAR yes 34430206
chr1 200261476 200261492 POU4F3 JASPAR yes 34430207
chr1 200261482 200261497 MEF2C JASPAR yes 34430208
chr1 200261482 200261503 IRF1 JASPAR yes 34430209
chr1 200261486 200261492 TBP TRANSFAC yes 34430210
chr1 200261487 200261502 FOXP1 JASPAR yes 34430211
Genes associated with rs2140558[chr1:200261488], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More