EnhancerDB
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  3. rs2477678[chr1:2478511]
Enhancers that have rs2477678[chr1:2478511]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 2471065 2481828 enh9
Bone Marrow (K562) Prostate (RWPE1) Blood (T-cell) Muscle (A673) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Heart
chr1 2478276 2478817 vista79
VISTA
Transcript factors that have rs2477678[chr1:2478511]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 2474585 2478941 TCF7L2 GTRD no Colon (HCT116) 107801828
chr1 2474585 2478941 TCF7L2 GTRD no Colon (HCT116) 107801829
chr1 2478505 2478515 SP1 JASPAR yes 26244039
chr1 2478505 2478515 SP1 JASPAR yes 118217028
chr1 2478508 2478513 SP1 TRANSFAC yes 26244040
chr1 2478508 2478513 SP1 TRANSFAC yes 118217029
chr1 2478509 2478523 PLAG1 JASPAR yes 26244041
chr1 2478509 2478523 PLAG1 JASPAR yes 118217030
Genes associated with rs2477678[chr1:2478511], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More