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- rs2575358[chr16:1978487]
Enhancers that have rs2575358[chr16:1978487]
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| Chrom. |
Start |
End |
Enhancer ID |
Tissues that enhancer appears |
More |
| chr16 |
1977210 |
1987595 |
enh16500 |
|
|
Transcript factors that have rs2575358[chr16:1978487]
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| Chrom. |
Start |
End |
TF name |
Source |
Predicted site? |
Tissue |
id |
More |
|
chr16
|
1976513
|
1983045
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108171868
|
|
|
chr16
|
1976970
|
1981660
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108171869
|
|
|
chr16
|
1977680
|
1980548
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108171870
|
|
|
chr16
|
1977767
|
1980762
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108171871
|
|
|
chr16
|
1977926
|
1980913
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108171872
|
|
|
chr16
|
1978041
|
1981158
|
ZNF143
|
GTRD
|
no
|
Epithelial (MCF-7)
|
108171873
|
|
|
chr16
|
1978132
|
1980917
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108171874
|
|
|
chr16
|
1978353
|
1981854
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108171875
|
|
|
chr16
|
1978390
|
1980433
|
TCF7L2
|
GTRD
|
no
|
Colon (HCT116)
|
108171876
|
|
|
chr16
|
1978481
|
1978495
|
GLIS3
|
JASPAR
|
yes
|
|
9166153
|
|
|
chr16
|
1978484
|
1978489
|
SP1
|
TRANSFAC
|
yes
|
|
9166154
|
|
|
chr16
|
1978486
|
1978499
|
NFKB1
|
JASPAR
|
yes
|
|
9166155
|
|
|
chr16
|
1978486
|
1978499
|
NFKB2
|
JASPAR
|
yes
|
|
9166156
|
|
|
chr16
|
1978487
|
1978497
|
RELA
|
JASPAR
|
yes
|
|
9166157
|
|
|
chr16
|
1978487
|
1978498
|
NFKB1
|
JASPAR
|
yes
|
|
9166158
|
|
Genes associated with rs2575358[chr16:1978487], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
| Chrom. |
Start |
End |
Strand |
Gene name |
Ensembl ID |
TSS of gene |
Distance between TSS and SNP |
Tissue |
q Value |
id |
More |