EnhancerDB
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  3. rs2809942[chr1:52416078]
Enhancers that have rs2809942[chr1:52416078]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 52410065 52425504 enh361
Brain (SK-N-MC) Prostate (RWPE1) Bone (Osteoblast) Blood (OCI-LY7) Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Neural Stem Cells (H9)
Transcript factors that have rs2809942[chr1:52416078]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52416071 52416090 PAX5 JASPAR yes 28877013
chr1 52416074 52416081 NKX3-1 JASPAR yes 28877014
chr1 52416075 52416083 FOXC1 JASPAR yes 28877015
Genes associated with rs2809942[chr1:52416078], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More