EnhancerDB
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  3. rs2809946[chr1:52422955]
Enhancers that have rs2809946[chr1:52422955]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 52410065 52425504 enh361
Brain (SK-N-MC) Prostate (RWPE1) Bone (Osteoblast) Blood (OCI-LY7) Muscle (A673) Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Neural Stem Cells (H9)
Transcript factors that have rs2809946[chr1:52422955]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 52422948 52422963 HNF4A JASPAR yes 28878027
chr1 52422949 52422964 HNF4G JASPAR yes 28878028
chr1 52422953 52422963 NFIA JASPAR yes 28878029
chr1 52422954 52422963 NFIX JASPAR yes 28878030
chr1 52422955 52422961 NFIC JASPAR yes 28878031
Genes associated with rs2809946[chr1:52422955], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More