EnhancerDB
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  3. rs28709983[chr5:171700106]
Enhancers that have rs28709983[chr5:171700106]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 171697618 171706015 enh8879
Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Bone (Osteoblast) Blood (GM12878) Placenta Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs28709983[chr5:171700106]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 171700089 171700110 IRF1 JASPAR yes 67777387
chr5 171700092 171700106 IRF7 JASPAR yes 67777389
chr5 171700094 171700106 IRF1 JASPAR yes 67777390
chr5 171700095 171700110 FOXP1 JASPAR yes 67777391
chr5 171700095 171700110 MEF2C JASPAR yes 67777392
chr5 171700095 171700116 IRF1 JASPAR yes 67777393
chr5 171700096 171700111 MEF2A JASPAR yes 67777394
chr5 171700097 171700109 FOXC2 JASPAR yes 67777395
chr5 171700097 171700109 MEF2A JASPAR yes 67777396
chr5 171700097 171700109 MEF2B JASPAR yes 67777397
chr5 171700097 171700109 MEF2D JASPAR yes 67777398
chr5 171700098 171700108 MEF2A JASPAR yes 67777399
chr5 171700100 171700112 IRF1 JASPAR yes 67777400
chr5 171700101 171700116 FOXP1 JASPAR yes 67777401
chr5 171700101 171700116 MEF2C JASPAR yes 67777402
chr5 171700101 171700122 IRF1 JASPAR yes 67777403
chr5 171700102 171700117 MEF2A JASPAR yes 67777404
chr5 171700103 171700115 FOXC2 JASPAR yes 67777405
chr5 171700103 171700115 MEF2A JASPAR yes 67777406
chr5 171700103 171700115 MEF2B JASPAR yes 67777407
chr5 171700103 171700115 MEF2D JASPAR yes 67777408
chr5 171700104 171700114 MEF2A JASPAR yes 67777409
chr5 171700106 171700118 IRF1 JASPAR yes 67777410
Genes associated with rs28709983[chr5:171700106], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More