EnhancerDB
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  3. rs3747960[chr1:180920534]
Enhancers that have rs3747960[chr1:180920534]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 180918492 180927335 enh788
Brain (SK-N-SH) Prostate (RWPE1) Blood (Karpas-422) Pancreas (Panc1) Uterus Thymus
Transcript factors that have rs3747960[chr1:180920534]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 180919790 180921118 ZNF143 GTRD no Epithelial (MCF-7) 107848041
chr1 180920136 180921435 ZNF274 GTRD no Bone Marrow (K562) 107848042
chr1 180920215 180921086 ZNF274 GTRD no Bone Marrow (K562) 107848043
chr1 180920235 180921184 ZNF274 GTRD no Bone Marrow (K562) 107848044
chr1 180920312 180921128 ZNF274 GTRD no Bone Marrow (K562) 107848045
chr1 180920326 180921482 ZNF143 GTRD no Epithelial (MCF-7) 107848046
chr1 180920331 180921328 ZNF274 GTRD no Bone Marrow (K562) 107848047
chr1 180920343 180921415 ZNF143 GTRD no Epithelial (MCF-7) 107848048
chr1 180920353 180921188 ZNF143 GTRD no Epithelial (MCF-7) 107848049
chr1 180920389 180921333 ZBTB33 GTRD no Lung (A549) 107848050
chr1 180920391 180921206 ZNF274 GTRD no Bone Marrow (K562) 107848051
chr1 180920409 180921347 ZBTB33 GTRD no Lung (A549) 107848052
chr1 180920446 180921286 ZNF274 GTRD no Bone Marrow (K562) 107848053
chr1 180920482 180921326 ZNF274 GTRD no Blood (GM12878) 107848054
chr1 180920517 180921076 ZNF274 GTRD no Blood (GM12878) 107848055
chr1 180920519 180921207 ZNF274 GTRD no Cervix (HeLa-S3) 107848056
chr1 180920532 180920544 HES7 JASPAR yes 33542774
chr1 180920533 180920542 SNAI2 JASPAR yes 33542775
chr1 180920533 180920543 HEY2 JASPAR yes 33542776
chr1 180920533 180920543 ID4 JASPAR yes 33542777
chr1 180920533 180920543 TCF4 JASPAR yes 33542778
Genes associated with rs3747960[chr1:180920534], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More