EnhancerDB
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  3. rs375620598[chr1:200412485]
Enhancers that have rs375620598[chr1:200412485]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200395745 200424875 enh27417
Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Astrocyte Peripheral Blood (MM.1S) Lung (PC-9) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs375620598[chr1:200412485]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200407168 200412701 ZNF143 GTRD no Epithelial (MCF-7) 21363483
chr1 200408739 200412574 ZNF143 GTRD no Epithelial (MCF-7) 21363494
chr1 200412093 200412549 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21363557
chr1 200412475 200412485 HOXC10 JASPAR yes 34448132
chr1 200412475 200412485 HOXD11 JASPAR yes 34448133
chr1 200412475 200412486 HOXC11 JASPAR yes 34448134
chr1 200412475 200412486 HOXC12 JASPAR yes 34448135
chr1 200412475 200412486 HOXC13 JASPAR yes 34448136
chr1 200412475 200412486 HOXD12 JASPAR yes 34448137
chr1 200412483 200412493 CEBPG JASPAR yes 34448138
chr1 200412485 200412491 JUN TRANSFAC yes 34448139
Genes associated with rs375620598[chr1:200412485], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More