EnhancerDB
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  3. rs397962340[chr1:232726470]
Enhancers that have rs397962340[chr1:232726470]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 232723148 232738675 enh12785
Epithelial (MCF-7) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Blood (OCI-LY7) Blood (GM12878) Stomach Muscle (A673) Placenta Thyroid Peripheral Blood (MM.1S) Lung (PC-9) Muscle (Myotube) Blood (T-cell) Heart
Transcript factors that have rs397962340[chr1:232726470]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 232726191 232726725 ZNF143 GTRD no Epithelial (MCF-7) 21392262
chr1 232726191 232726725 ZNF143 GTRD no Epithelial (MCF-7) 107879413
chr1 232726191 232726725 ZNF143 GTRD no Epithelial (MCF-7) 107879414
chr1 232726266 232726841 ZBTB33 GTRD no Brain (SK-N-SH) 107879415
chr1 232726266 232726841 ZBTB33 GTRD no Brain (SK-N-SH) 107879416
chr1 232726319 232726983 ZBTB33 GTRD no Brain (SK-N-SH) 107879417
chr1 232726319 232726983 ZBTB33 GTRD no Brain (SK-N-SH) 107879418
chr1 232726347 232726887 ZBTB33 GTRD no Brain (SK-N-SH) 107879419
chr1 232726347 232726887 ZBTB33 GTRD no Brain (SK-N-SH) 107879420
chr1 232726401 232726989 ZNF143 GTRD no Epithelial (MCF-7) 21392263
chr1 232726401 232726989 ZNF143 GTRD no Epithelial (MCF-7) 107879421
chr1 232726415 232726849 ZNF274 GTRD no Blood (GM12878) 21392264
chr1 232726415 232726849 ZNF274 GTRD no Blood (GM12878) 107879422
chr1 232726442 232726718 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21392265
chr1 232726442 232726718 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 107879423
chr1 232726451 232726472 IRF1 JASPAR yes 36174623
chr1 232726457 232726478 IRF1 JASPAR yes 36174628
chr1 232726458 232726479 IRF1 JASPAR yes 36174629
chr1 232726459 232726480 IRF1 JASPAR yes 36174630
chr1 232726461 232726475 SPIC JASPAR yes 36174631
chr1 232726464 232726479 FOXP1 JASPAR yes 36174632
chr1 232726464 232726485 IRF1 JASPAR yes 36174633
chr1 232726465 232726480 FOXP1 JASPAR yes 36174634
chr1 232726465 232726486 IRF1 JASPAR yes 36174635
chr1 232726466 232726471 ETS2 TRANSFAC yes 36174636
Genes associated with rs397962340[chr1:232726470], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More