EnhancerDB
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  3. rs397979162[chr1:9984411]
Enhancers that have rs397979162[chr1:9984411]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 9980499 9987615 enh66840
Neural Stem Cells (H9)
Transcript factors that have rs397979162[chr1:9984411]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 9984405 9984420 FOXA1 JASPAR yes 26692282
chr1 9984406 9984418 FOXI1 JASPAR yes 26692283
chr1 9984406 9984420 POU4F1 JASPAR yes 26692284
chr1 9984406 9984421 FOXP1 JASPAR yes 26692285
chr1 9984406 9984421 HNF1A JASPAR yes 26692286
chr1 9984407 9984419 FOXC2 JASPAR yes 26692287
chr1 9984407 9984421 ONECUT2 JASPAR yes 26692288
chr1 9984407 9984421 ONECUT3 JASPAR yes 26692289
chr1 9984408 9984419 FOXB1 JASPAR yes 26692290
chr1 9984408 9984419 FOXC1 JASPAR yes 26692291
chr1 9984408 9984419 PROP1 JASPAR yes 26692292
chr1 9984408 9984424 POU4F2 JASPAR yes 26692293
chr1 9984408 9984424 POU4F3 JASPAR yes 26692294
chr1 9984409 9984413 YY1 TRANSFAC yes 26692295
chr1 9984409 9984424 FOXA1 JASPAR yes 26692296
chr1 9984410 9984422 FOXI1 JASPAR yes 26692297
chr1 9984410 9984424 POU4F1 JASPAR yes 26692298
chr1 9984410 9984425 FOXP1 JASPAR yes 26692299
chr1 9984410 9984425 HNF1A JASPAR yes 26692300
chr1 9984411 9984423 FOXC2 JASPAR yes 26692301
chr1 9984411 9984425 ONECUT2 JASPAR yes 26692302
chr1 9984411 9984425 ONECUT3 JASPAR yes 26692303
Genes associated with rs397979162[chr1:9984411], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More