EnhancerDB
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  3. rs398033691[chr19:1853983]
Enhancers that have rs398033691[chr19:1853983]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 1850045 1876795 enh4955
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (GM12878) Placenta Blood (Karpas-422) Pancreas Uterus Thymus
Transcript factors that have rs398033691[chr19:1853983]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355215
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355216
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355217
chr19 1850599 1854179 ZNF274 GTRD no Blood (GM12878) 21832658
chr19 1850599 1856222 TCF7L2 GTRD no Colon (HCT116) 108355218
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355219
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355220
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355221
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 21832698
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355222
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355223
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355224
chr19 1851750 1854173 ZNF274 GTRD no Bone Marrow (K562) 21832703
chr19 1851964 1854134 ZNF274 GTRD no Blood (GM12878) 21832709
chr19 1852617 1856671 ZNF143 GTRD no Epithelial (MCF-7) 108355225
chr19 1852846 1856263 ZNF143 GTRD no Epithelial (MCF-7) 108355226
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 21832711
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355227
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355228
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355229
chr19 1853089 1856902 TCF7L2 GTRD no Colon (HCT116) 108355230
chr19 1853089 1856902 TCF7L2 GTRD no Colon (HCT116) 108355231
chr19 1853105 1856400 ZBTB33 GTRD no Lung (A549) 108355232
chr19 1853559 1855422 ZNF274 GTRD no Bone Marrow (K562) 21832712
chr19 1853559 1855422 ZNF274 GTRD no Bone Marrow (K562) 108355233
chr19 1853874 1855781 ZNF274 GTRD no Bone Marrow (K562) 21832713
chr19 1853874 1855781 ZNF274 GTRD no Bone Marrow (K562) 108355234
chr19 1853964 1853984 RREB1 JASPAR yes 112032539
chr19 1853967 1853987 RREB1 JASPAR yes 112032540
chr19 1853968 1853988 RREB1 JASPAR yes 112032541
chr19 1853973 1853993 RREB1 JASPAR yes 112032542
chr19 1853974 1853994 RREB1 JASPAR yes 112032543
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 21832714
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 108355235
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 108355236
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 108355237
chr19 1853975 1853995 RREB1 JASPAR yes 112032545
chr19 1853976 1853996 RREB1 JASPAR yes 112032546
chr19 1853977 1853998 ZNF263 JASPAR yes 112032547
chr19 1853978 1853998 RREB1 JASPAR yes 112032548
chr19 1853979 1853999 RREB1 JASPAR yes 112032549
chr19 1853980 1853985 SP1 TRANSFAC yes 112032550
chr19 1853980 1854000 RREB1 JASPAR yes 112032551
chr19 1853981 1853991 ZNF740 JASPAR yes 112032552
chr19 1853981 1853995 PLAG1 JASPAR yes 112032553
chr19 1853983 1853993 SP1 JASPAR yes 112032554
chr19 1853983 1854003 RREB1 JASPAR yes 112032555
chr19 1853983 1854004 ZNF263 JASPAR yes 112032556
Genes associated with rs398033691[chr19:1853983], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr19 1905213 1926016 + SCAMP4 ENSG00000227500.5 1905213 51230 Heart 0.125421 16765