EnhancerDB
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  3. rs4271171[chr1:178985658]
Enhancers that have rs4271171[chr1:178985658]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 178984125 178989295 enh12414
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Cervix (HeLa-S3) Prostate (RWPE1) Brain (SK-N-SH) Esophagus Bone (Osteoblast) Lung Stomach Placenta Lung (PC-9) Pancreas Spleen Heart
Transcript factors that have rs4271171[chr1:178985658]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 178985094 178985895 ZNF143 GTRD no Epithelial (MCF-7) 21353033
chr1 178985164 178985863 ZNF143 GTRD no Epithelial (MCF-7) 21353034
chr1 178985199 178985933 ZNF143 GTRD no Epithelial (MCF-7) 21353035
chr1 178985326 178985658 ZNF143 GTRD no Epithelial (MCF-7) 21353036
chr1 178985656 178985669 POU2F2 JASPAR yes 33460589
chr1 178985656 178985670 POU1F1 JASPAR yes 33460590
chr1 178985657 178985661 YY1 TRANSFAC yes 33460591
chr1 178985657 178985669 POU3F1 JASPAR yes 33460592
chr1 178985657 178985669 POU3F2 JASPAR yes 33460593
Genes associated with rs4271171[chr1:178985658], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr1 178994939 179045697 + FAM20B ENSG00000116199.7 178994939 9281 Spleen 0.0298996 1604