EnhancerDB
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  3. rs4658340[chr1:90327555]
Enhancers that have rs4658340[chr1:90327555]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 90326658 90341655 enh483
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Blood (T-cell) Liver Astrocyte Lung (PC-9) Blood (OCI-LY7) Muscle (A673) Colon (HCT116) Blood (Karpas-422) Muscle (Myoblast) Pancreas Spleen Thymus Heart
Transcript factors that have rs4658340[chr1:90327555]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 90327553 90327568 HNF1A JASPAR yes 30626253
chr1 90327554 90327568 ONECUT1 JASPAR yes 30626254
chr1 90327554 90327568 ONECUT2 JASPAR yes 30626255
chr1 90327554 90327568 ONECUT3 JASPAR yes 30626256
chr1 90327555 90327565 CUX1 JASPAR yes 30626257
chr1 90327555 90327565 CUX2 JASPAR yes 30626258
chr1 90327555 90327565 PAX3 JASPAR yes 30626259
chr1 90327555 90327565 PAX7 JASPAR yes 30626260
Genes associated with rs4658340[chr1:90327555], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More