EnhancerDB
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  3. rs529358952[chr19:14669409]
Enhancers that have rs529358952[chr19:14669409]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 14658964 14673635 enh5022
Astrocyte Colon (HCT116) Blood (Karpas-422) Blood (T-cell) Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs529358952[chr19:14669409]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 14669400 14669415 TFAP2A JASPAR yes 112579245
chr19 14669400 14669415 TFAP2C JASPAR yes 112579246
chr19 14669403 14669414 TFAP2A JASPAR yes 112579247
chr19 14669403 14669414 TFAP2B JASPAR yes 112579248
chr19 14669403 14669414 TFAP2C JASPAR yes 112579249
chr19 14669403 14669415 TFAP2A JASPAR yes 112579250
chr19 14669403 14669415 TFAP2B JASPAR yes 112579251
chr19 14669403 14669415 TFAP2C JASPAR yes 112579252
chr19 14669404 14669413 TFAP2A JASPAR yes 112579253
Genes associated with rs529358952[chr19:14669409], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr19 15218214 15225799 + SYDE1 ENSG00000105137.8 15218214 548805 Pancreas 0.196317 17160