EnhancerDB
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  3. rs533340054[chr1:200453871]
Enhancers that have rs533340054[chr1:200453871]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200450387 200461835 enh12512
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Placenta Lung (PC-9) Pancreas Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs533340054[chr1:200453871]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200452697 200455179 ZNF274 GTRD no Cervix (HeLa-S3) 21363654
chr1 200453040 200454180 TEF1 GTRD no Bone (Osteoblast) 21363659
chr1 200453150 200454140 ZNF274 GTRD no Cervix (HeLa-S3) 21363660
chr1 200453179 200454073 ZNF143 GTRD no Epithelial (MCF-7) 21363661
chr1 200453234 200454104 ZNF274 GTRD no Cervix (HeLa-S3) 21363662
chr1 200453294 200454104 ZNF274 GTRD no Cervix (HeLa-S3) 21363663
chr1 200453314 200454406 ZNF274 GTRD no Cervix (HeLa-S3) 21363664
chr1 200453350 200454021 ZNF274 GTRD no Cervix (HeLa-S3) 21363665
chr1 200453363 200453967 ZNF274 GTRD no Cervix (HeLa-S3) 21363666
chr1 200453542 200453950 ZNF143 GTRD no Epithelial (MCF-7) 21363667
chr1 200453609 200454079 ZNF143 GTRD no Epithelial (MCF-7) 21363668
chr1 200453796 200454504 ZNF143 GTRD no Epithelial (MCF-7) 21363669
chr1 200453856 200454116 ZNF143 GTRD no Epithelial (MCF-7) 21363670
chr1 200453862 200453882 RREB1 JASPAR yes 34454000
chr1 200453863 200453883 RREB1 JASPAR yes 34454001
chr1 200453866 200453872 TCF4 TRANSFAC yes 34454002
chr1 200453866 200453878 FOXI1 JASPAR yes 34454003
chr1 200453866 200453881 FOXP1 JASPAR yes 34454004
chr1 200453869 200453884 FOXA1 JASPAR yes 34454005
chr1 200453870 200453882 FOXI1 JASPAR yes 34454006
chr1 200453870 200453885 FOXP1 JASPAR yes 34454007
chr1 200453871 200453883 FOXC2 JASPAR yes 34454008
Genes associated with rs533340054[chr1:200453871], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More