EnhancerDB
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Enhancers that have rs533504007[chr1:116853314]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 116846225 116879811 enh580
Bone Marrow (K562) Brain (SK-N-MC) Liver Blood (Karpas-422) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs533504007[chr1:116853314]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 116852038 116854512 ZNF143 GTRD no Epithelial (MCF-7) 21331955
chr1 116852111 116853328 ZNF274 GTRD no Bone Marrow (K562) 21331956
chr1 116852129 116853328 ZNF274 GTRD no Bone Marrow (K562) 21331957
chr1 116852222 116855719 ZNF143 GTRD no Epithelial (MCF-7) 21331958
chr1 116852458 116856181 ZNF274 GTRD no Cervix (HeLa-S3) 21331960
chr1 116852657 116856456 ZNF143 GTRD no Epithelial (MCF-7) 21331961
chr1 116852671 116854447 ZNF274 GTRD no Bone Marrow (K562) 21331962
chr1 116852687 116854276 ZNF274 GTRD no Bone Marrow (K562) 21331963
chr1 116852689 116854789 ZNF143 GTRD no Epithelial (MCF-7) 21331964
chr1 116852771 116854250 ZNF143 GTRD no Epithelial (MCF-7) 21331965
chr1 116852789 116856632 ZNF143 GTRD no Epithelial (MCF-7) 21331966
chr1 116852849 116854225 ZNF143 GTRD no Epithelial (MCF-7) 21331967
chr1 116852879 116854621 ZNF274 GTRD no Bone Marrow (K562) 21331968
chr1 116853035 116854353 ZNF274 GTRD no Bone Marrow (K562) 21331970
chr1 116853043 116853476 ZNF274 GTRD no Bone Marrow (K562) 21331971
chr1 116853106 116854528 ZNF143 GTRD no Epithelial (MCF-7) 21331972
chr1 116853133 116854303 ZNF143 GTRD no Epithelial (MCF-7) 21331973
chr1 116853289 116854380 ZNF143 GTRD no Epithelial (MCF-7) 21331974
chr1 116853303 116853318 HNF1A JASPAR yes 31792686
chr1 116853304 116853317 HNF1B JASPAR yes 31792687
chr1 116853304 116853318 POU4F1 JASPAR yes 31792688
chr1 116853304 116853320 POU4F2 JASPAR yes 31792689
chr1 116853304 116853320 POU4F3 JASPAR yes 31792690
chr1 116853307 116853317 GSX2 JASPAR yes 31792691
chr1 116853307 116853317 HOXB2 JASPAR yes 31792692
chr1 116853307 116853317 HOXB3 JASPAR yes 31792693
chr1 116853307 116853317 MNX1 JASPAR yes 31792694
chr1 116853307 116853317 POU6F1 JASPAR yes 31792695
chr1 116853308 116853316 LMX1A JASPAR yes 31792696
chr1 116853308 116853316 LMX1B JASPAR yes 31792697
chr1 116853308 116853316 NKX6-1 JASPAR yes 31792698
chr1 116853308 116853316 NKX6-2 JASPAR yes 31792699
chr1 116853308 116853316 VAX1 JASPAR yes 31792700
chr1 116853308 116853316 VAX2 JASPAR yes 31792701
chr1 116853308 116853316 VSX1 JASPAR yes 31792702
chr1 116853308 116853316 VSX2 JASPAR yes 31792703
chr1 116853312 116853327 FOXP1 JASPAR yes 31792704
chr1 116853313 116853328 FOXP1 JASPAR yes 31792705
chr1 116853313 116853334 IRF1 JASPAR yes 31792706
chr1 116853314 116853329 FOXP1 JASPAR yes 31792707
Genes associated with rs533504007[chr1:116853314], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More