EnhancerDB
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  3. rs534926440[chr1:116852912]
Enhancers that have rs534926440[chr1:116852912]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 116846225 116879811 enh580
Bone Marrow (K562) Brain (SK-N-MC) Liver Blood (Karpas-422) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs534926440[chr1:116852912]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 116852012 116853003 ZNF143 GTRD no Epithelial (MCF-7) 21331954
chr1 116852038 116854512 ZNF143 GTRD no Epithelial (MCF-7) 21331955
chr1 116852111 116853328 ZNF274 GTRD no Bone Marrow (K562) 21331956
chr1 116852129 116853328 ZNF274 GTRD no Bone Marrow (K562) 21331957
chr1 116852222 116855719 ZNF143 GTRD no Epithelial (MCF-7) 21331958
chr1 116852241 116853247 ZNF143 GTRD no Epithelial (MCF-7) 21331959
chr1 116852458 116856181 ZNF274 GTRD no Cervix (HeLa-S3) 21331960
chr1 116852657 116856456 ZNF143 GTRD no Epithelial (MCF-7) 21331961
chr1 116852671 116854447 ZNF274 GTRD no Bone Marrow (K562) 21331962
chr1 116852687 116854276 ZNF274 GTRD no Bone Marrow (K562) 21331963
chr1 116852689 116854789 ZNF143 GTRD no Epithelial (MCF-7) 21331964
chr1 116852771 116854250 ZNF143 GTRD no Epithelial (MCF-7) 21331965
chr1 116852789 116856632 ZNF143 GTRD no Epithelial (MCF-7) 21331966
chr1 116852849 116854225 ZNF143 GTRD no Epithelial (MCF-7) 21331967
chr1 116852879 116854621 ZNF274 GTRD no Bone Marrow (K562) 21331968
chr1 116852894 116853285 ZNF274 GTRD no Bone Marrow (K562) 21331969
chr1 116852906 116852912 ETS1 JASPAR yes 31792640
chr1 116852906 116852912 SPI1 JASPAR yes 31792641
chr1 116852910 116852920 SMAD3 JASPAR yes 31792642
Genes associated with rs534926440[chr1:116852912], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More