EnhancerDB
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  3. rs535048549[chr1:42227825]
Enhancers that have rs535048549[chr1:42227825]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42213671 42252455 enh291
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Esophagus Blood (GM12878) Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs535048549[chr1:42227825]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42227816 42227827 CDX2 JASPAR yes 28419080
chr1 42227817 42227829 SRF JASPAR yes 28419081
chr1 42227818 42227827 CDX1 JASPAR yes 28419082
chr1 42227818 42227828 HOXA13 JASPAR yes 28419083
chr1 42227818 42227828 HOXB13 JASPAR yes 28419084
chr1 42227818 42227828 HOXD13 JASPAR yes 28419085
Genes associated with rs535048549[chr1:42227825], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More