EnhancerDB
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  3. rs538242362[chr12:109001974]
Enhancers that have rs538242362[chr12:109001974]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 108997229 109015819 enh14971
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (T-cell) Stomach Epithelial (MCF-7) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs538242362[chr12:109001974]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 109001963 109001976 TFAP2A JASPAR yes 123606052
chr12 109001963 109001976 TFAP2B JASPAR yes 123606053
chr12 109001963 109001976 TFAP2C JASPAR yes 123606054
chr12 109001964 109001976 TFAP2A JASPAR yes 123606055
chr12 109001964 109001976 TFAP2B JASPAR yes 123606056
chr12 109001964 109001976 TFAP2C JASPAR yes 123606057
chr12 109001971 109001975 LFA1 TRANSFAC yes 123606058
Genes associated with rs538242362[chr12:109001974], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More