EnhancerDB
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  3. rs539340603[chr12:50327400]
Enhancers that have rs539340603[chr12:50327400]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 50322803 50339035 enh2341
Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Bone (Osteoblast) Blood (Karpas-422) Lung (PC-9) Pancreas Spleen Stomach
Transcript factors that have rs539340603[chr12:50327400]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 50325554 50327752 ZNF274 GTRD no Cervix (HeLa-S3) 21544940
chr12 50325797 50327459 ZNF274 GTRD no Cervix (HeLa-S3) 21544942
chr12 50326489 50327540 ZNF274 GTRD no Cervix (HeLa-S3) 21544946
chr12 50326511 50327482 ZNF274 GTRD no Cervix (HeLa-S3) 21544948
chr12 50326639 50327750 ZNF274 GTRD no Cervix (HeLa-S3) 21544951
chr12 50327391 50327404 ZBTB18 JASPAR yes 120807752
chr12 50327392 50327404 PKNOX1 JASPAR yes 120807753
chr12 50327392 50327404 TGIF1 JASPAR yes 120807754
chr12 50327393 50327402 SNAI2 JASPAR yes 120807755
chr12 50327393 50327403 FIGLA JASPAR yes 120807756
chr12 50327393 50327403 ID4 JASPAR yes 120807757
chr12 50327393 50327403 TCF3 JASPAR yes 120807758
chr12 50327393 50327403 TCF4 JASPAR yes 120807759
chr12 50327395 50327404 ZEB1 JASPAR yes 120807760
chr12 50327395 50327405 TBX21 JASPAR yes 120807761
chr12 50327396 50327404 MGA JASPAR yes 120807762
chr12 50327396 50327404 TBX15 JASPAR yes 120807763
chr12 50327396 50327404 TBX1 JASPAR yes 120807764
chr12 50327396 50327404 TBX4 JASPAR yes 120807765
chr12 50327396 50327404 TBX5 JASPAR yes 120807766
chr12 50327396 50327406 TBR1 JASPAR yes 120807767
chr12 50327396 50327409 SMAD2 JASPAR yes 120807768
Genes associated with rs539340603[chr12:50327400], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More