EnhancerDB
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  3. rs539870689[chr19:4144356]
Enhancers that have rs539870689[chr19:4144356]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 4134682 4148106 enh52837
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Colon (HCT116) Lung (PC-9) Pancreas Pancreas (Panc1) Stomach
Transcript factors that have rs539870689[chr19:4144356]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 4143673 4146698 TCF7L2 GTRD no Colon (HCT116) 21840527
chr19 4143769 4144378 TCF7L2 GTRD no Colon (HCT116) 21840528
chr19 4143826 4146535 ZNF274 GTRD no Bone Marrow (K562) 21840529
chr19 4143841 4144463 ZNF274 GTRD no Liver (HepG2) 21840530
chr19 4143844 4146448 ZNF274 GTRD no Bone Marrow (K562) 21840531
chr19 4143866 4144372 TCF7L2 GTRD no Colon (HCT116) 21840532
chr19 4143892 4144391 TCF7L2 GTRD no Colon (HCT116) 21840533
chr19 4144294 4145388 TCF7L2 GTRD no Colon (HCT116) 21840540
chr19 4144336 4144357 IRF1 JASPAR yes 112165713
chr19 4144340 4144361 IRF1 JASPAR yes 112165718
chr19 4144341 4144356 FOXP1 JASPAR yes 112165719
chr19 4144342 4144357 STAT2 JASPAR yes 112165720
chr19 4144344 4144365 IRF1 JASPAR yes 112165721
chr19 4144345 4144360 FOXP1 JASPAR yes 112165722
chr19 4144345 4144366 IRF1 JASPAR yes 112165723
chr19 4144346 4144361 FOXP1 JASPAR yes 112165724
chr19 4144346 4144367 IRF1 JASPAR yes 112165725
chr19 4144350 4144364 IRF7 JASPAR yes 112165726
chr19 4144350 4144371 IRF1 JASPAR yes 112165727
chr19 4144351 4144366 FOXP1 JASPAR yes 112165728
chr19 4144352 4144367 PRDM1 JASPAR yes 112165729
Genes associated with rs539870689[chr19:4144356], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More