EnhancerDB
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  3. rs539949497[chr1:39563954]
Enhancers that have rs539949497[chr1:39563954]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 39562325 39585995 enh11758
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Ovary Esophagus Astrocyte Liver Lung (PC-9) Bone (Osteoblast) Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Uterus
Transcript factors that have rs539949497[chr1:39563954]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 39563942 39563956 RORA JASPAR yes 28250695
chr1 39563946 39563955 PITX3 JASPAR yes 28250696
chr1 39563946 39563956 GSC2 JASPAR yes 28250697
chr1 39563946 39563956 GSC JASPAR yes 28250698
chr1 39563947 39563955 OTX2 JASPAR yes 28250699
Genes associated with rs539949497[chr1:39563954], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More