EnhancerDB
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  3. rs540288779[chr2:122352126]
Enhancers that have rs540288779[chr2:122352126]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 122350905 122363015 enh5814
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Brain (SK-N-SH) Blood (GM12878) Stomach Muscle (A673) Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Muscle (Myotube) Thymus Heart
Transcript factors that have rs540288779[chr2:122352126]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 122352120 122352130 SP1 JASPAR yes 76628257
chr2 122352120 122352139 PAX5 JASPAR yes 76628258
chr2 122352123 122352128 SP1 TRANSFAC yes 76628259
Genes associated with rs540288779[chr2:122352126], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More