EnhancerDB
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  3. rs540398642[chr6:43766538]
Enhancers that have rs540398642[chr6:43766538]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr6 43752825 43813215 enh23254
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673) Heart
chr6 43766474 43766976 vista52021
VISTA
Transcript factors that have rs540398642[chr6:43766538]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr6 43766527 43766547 RREB1 JASPAR yes 70367354
chr6 43766527 43766547 RREB1 JASPAR yes 101785878
chr6 43766535 43766555 RREB1 JASPAR yes 70367355
chr6 43766535 43766555 RREB1 JASPAR yes 101785879
chr6 43766537 43766557 RREB1 JASPAR yes 70367356
chr6 43766537 43766557 RREB1 JASPAR yes 101785880
Genes associated with rs540398642[chr6:43766538], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More