EnhancerDB
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  3. rs540519990[chr1:42424848]
Enhancers that have rs540519990[chr1:42424848]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42414541 42425761 enh26655
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Lung (PC-9) Astrocyte Bone (Osteoblast) Blood (GM12878) Colon (HCT116) Breast Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs540519990[chr1:42424848]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42424847 42424862 RUNX2 JASPAR yes 28442263
chr1 42424848 42424859 RUNX1 JASPAR yes 28442264
Genes associated with rs540519990[chr1:42424848], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More