EnhancerDB
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  3. rs540610691[chr2:29339387]
Enhancers that have rs540610691[chr2:29339387]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 29326250 29340371 enh18402
Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Blood (GM12878) Placenta Colon (HCT116) Lung (PC-9) Muscle (Myoblast) Pancreas (Panc1) Epithelial (MCF-7)
chr2 29339148 29339698 vista30872
VISTA
Transcript factors that have rs540610691[chr2:29339387]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 29337832 29339722 POLR2A UCSC Txn Factor no Conserved 108431664
chr2 29338611 29339521 EZH2 UCSC Txn Factor no Conserved 108431665
chr2 29339296 29339594 USF1 UCSC Txn Factor no Conserved 108431666
chr2 29339300 29339576 USF2 UCSC Txn Factor no Conserved 108431667
chr2 29339311 29339587 CEBPB UCSC Txn Factor no Conserved 108431668
chr2 29339367 29339388 IRF1 JASPAR yes 22026900
chr2 29339367 29339388 IRF1 JASPAR yes 72689953
chr2 29339374 29339389 LEF1 JASPAR yes 22026905
chr2 29339374 29339389 LEF1 JASPAR yes 72689958
Genes associated with rs540610691[chr2:29339387], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More