EnhancerDB
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  3. rs540664959[chr1:116851889]
Enhancers that have rs540664959[chr1:116851889]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 116846225 116879811 enh580
Bone Marrow (K562) Brain (SK-N-MC) Liver Blood (Karpas-422) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs540664959[chr1:116851889]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 116851520 116851976 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21331949
chr1 116851555 116852071 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21331950
chr1 116851663 116851954 ZNF274 GTRD no Bone Marrow (K562) 21331951
chr1 116851743 116852073 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21331952
chr1 116851833 116851973 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21331953
chr1 116851888 116851902 TLX1 JASPAR yes 31792520
Genes associated with rs540664959[chr1:116851889], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More