EnhancerDB
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  3. rs540781538[chr1:7541634]
Enhancers that have rs540781538[chr1:7541634]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 7527289 7545958 enh11454
Astrocyte Adrenal Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Spleen Lung Muscle (A673) Heart
Transcript factors that have rs540781538[chr1:7541634]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 7541625 7541635 HOXC10 JASPAR yes 26468046
chr1 7541625 7541635 HOXD11 JASPAR yes 26468047
chr1 7541625 7541636 HOXC11 JASPAR yes 26468048
chr1 7541625 7541636 HOXC13 JASPAR yes 26468049
chr1 7541625 7541636 HOXD12 JASPAR yes 26468050
chr1 7541626 7541635 CDX1 JASPAR yes 26468051
chr1 7541627 7541640 JUN JASPAR yes 26468052
chr1 7541628 7541641 ATF4 JASPAR yes 26468053
chr1 7541629 7541640 CEBPA JASPAR yes 26468054
chr1 7541630 7541641 CEBPB JASPAR yes 26468055
Genes associated with rs540781538[chr1:7541634], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More