EnhancerDB
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  3. rs540800940[chr19:1854258]
Enhancers that have rs540800940[chr19:1854258]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 1850045 1876795 enh4955
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Blood (T-cell) Bone (Osteoblast) Blood (GM12878) Placenta Blood (Karpas-422) Pancreas Uterus Thymus
Transcript factors that have rs540800940[chr19:1854258]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355215
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355216
chr19 1850548 1866188 TCF7L2 GTRD no Colon (HCT116) 108355217
chr19 1850599 1856222 TCF7L2 GTRD no Colon (HCT116) 108355218
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355219
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355220
chr19 1850727 1858520 TCF7L2 GTRD no Colon (HCT116) 108355221
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 21832698
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355222
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355223
chr19 1851001 1866019 ZNF274 GTRD no Bone Marrow (K562) 108355224
chr19 1852617 1856671 ZNF143 GTRD no Epithelial (MCF-7) 108355225
chr19 1852846 1856263 ZNF143 GTRD no Epithelial (MCF-7) 108355226
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 21832711
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355227
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355228
chr19 1853045 1857793 ZNF274 GTRD no Bone Marrow (K562) 108355229
chr19 1853089 1856902 TCF7L2 GTRD no Colon (HCT116) 108355230
chr19 1853089 1856902 TCF7L2 GTRD no Colon (HCT116) 108355231
chr19 1853105 1856400 ZBTB33 GTRD no Lung (A549) 108355232
chr19 1853559 1855422 ZNF274 GTRD no Bone Marrow (K562) 21832712
chr19 1853559 1855422 ZNF274 GTRD no Bone Marrow (K562) 108355233
chr19 1853874 1855781 ZNF274 GTRD no Bone Marrow (K562) 21832713
chr19 1853874 1855781 ZNF274 GTRD no Bone Marrow (K562) 108355234
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 21832714
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 108355235
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 108355236
chr19 1853974 1859100 ZNF274 GTRD no Bone Marrow (K562) 108355237
chr19 1854170 1858427 ZNF274 GTRD no Bone Marrow (K562) 21832715
chr19 1854170 1858427 ZNF274 GTRD no Bone Marrow (K562) 108355238
chr19 1854170 1858427 ZNF274 GTRD no Bone Marrow (K562) 108355239
chr19 1854170 1858427 ZNF274 GTRD no Bone Marrow (K562) 108355240
chr19 1854187 1856119 ZNF274 GTRD no Bone Marrow (K562) 21832716
chr19 1854187 1856119 ZNF274 GTRD no Bone Marrow (K562) 108355241
chr19 1854201 1856118 ZNF274 GTRD no Bone Marrow (K562) 21832717
chr19 1854201 1856118 ZNF274 GTRD no Bone Marrow (K562) 108355242
chr19 1854216 1858410 ZNF274 GTRD no Bone Marrow (K562) 21832718
chr19 1854216 1858410 ZNF274 GTRD no Bone Marrow (K562) 108355243
chr19 1854216 1858410 ZNF274 GTRD no Bone Marrow (K562) 108355244
chr19 1854216 1858410 ZNF274 GTRD no Bone Marrow (K562) 108355245
chr19 1854234 1855796 ZNF274 GTRD no Bone Marrow (K562) 21832719
chr19 1854234 1855796 ZNF274 GTRD no Bone Marrow (K562) 108355246
chr19 1854257 1855417 ZNF274 GTRD no Bone Marrow (K562) 21832720
chr19 1854257 1855417 ZNF274 GTRD no Bone Marrow (K562) 108355247
Genes associated with rs540800940[chr19:1854258], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More