EnhancerDB
  1. Home
  2. SNP
  3. rs540801202[chr2:231552871]
Enhancers that have rs540801202[chr2:231552871]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 231540245 231567455 enh19309
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-MC) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Muscle (A673) Placenta Colon (HCT116) Thyroid Lung (PC-9) Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs540801202[chr2:231552871]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 231552867 231552877 HOXD13 JASPAR yes 81672395
chr2 231552867 231552878 HOXA10 JASPAR yes 81672396
chr2 231552868 231552878 ALX3 JASPAR yes 81672397
chr2 231552868 231552878 GSX2 JASPAR yes 81672398
chr2 231552868 231552878 MNX1 JASPAR yes 81672399
chr2 231552869 231552877 BARX1 JASPAR yes 81672400
chr2 231552869 231552877 BSX JASPAR yes 81672401
chr2 231552869 231552877 ISL2 JASPAR yes 81672402
chr2 231552869 231552877 LMX1B JASPAR yes 81672403
chr2 231552869 231552877 MSX1 JASPAR yes 81672404
chr2 231552869 231552877 MSX2 JASPAR yes 81672405
chr2 231552869 231552885 E2F2 JASPAR yes 81672406
Genes associated with rs540801202[chr2:231552871], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More