EnhancerDB
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  3. rs540802680[chr16:2896278]
Enhancers that have rs540802680[chr16:2896278]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 2883745 2901765 enh16505
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Breast Lung (PC-9) Pancreas Pancreas (Panc1) Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs540802680[chr16:2896278]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 2895497 2896665 ZNF143 GTRD no Epithelial (MCF-7) 21685217
chr16 2895549 2896332 ZNF274 GTRD no Cervix (HeLa-S3) 21685218
chr16 2895553 2896407 ZNF143 GTRD no Epithelial (MCF-7) 21685219
chr16 2895640 2896293 ZNF143 GTRD no Epithelial (MCF-7) 21685220
chr16 2895640 2896329 ZNF143 GTRD no Epithelial (MCF-7) 21685221
chr16 2895727 2896322 ZNF274 GTRD no Bone Marrow (K562) 21685223
chr16 2895883 2896301 ZNF274 GTRD no Bone Marrow (K562) 21685229
chr16 2896055 2898320 TCF7L2 GTRD no Colon (HCT116) 21685235
chr16 2896073 2898314 TCF7L2 GTRD no Colon (HCT116) 21685236
chr16 2896086 2897087 TCF7L2 GTRD no Colon (HCT116) 21685237
chr16 2896197 2897137 TCF7L2 GTRD no Colon (HCT116) 21685238
chr16 2896268 2896278 ID4 JASPAR yes 9193251
chr16 2896269 2896278 SNAI2 JASPAR yes 9193252
Genes associated with rs540802680[chr16:2896278], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More