EnhancerDB
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  3. rs540828331[chr1:117010590]
Enhancers that have rs540828331[chr1:117010590]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 117004485 117055235 enh585
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs540828331[chr1:117010590]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 117010586 117010601 PRDM1 JASPAR yes 31809756
chr1 117010586 117010601 STAT2 JASPAR yes 31809757
chr1 117010589 117010604 FOXP1 JASPAR yes 31809758
Genes associated with rs540828331[chr1:117010590], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More