EnhancerDB
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  3. rs540900979[chr1:182003185]
Enhancers that have rs540900979[chr1:182003185]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 182002641 182006791 enh67183
Neural Stem Cells (H9)
Transcript factors that have rs540900979[chr1:182003185]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 182003176 182003189 DUXA JASPAR yes 33585491
chr1 182003177 182003188 PHOX2A JASPAR yes 33585492
chr1 182003177 182003195 NFYA JASPAR yes 33585493
chr1 182003180 182003190 ALX3 JASPAR yes 33585494
chr1 182003180 182003190 GSX2 JASPAR yes 33585495
chr1 182003180 182003190 LBX2 JASPAR yes 33585496
chr1 182003180 182003190 MIXL1 JASPAR yes 33585497
chr1 182003181 182003185 H1TF2 TRANSFAC yes 33585498
chr1 182003181 182003185 NFE TRANSFAC yes 33585499
chr1 182003181 182003185 SRF TRANSFAC yes 33585500
chr1 182003181 182003189 BARX1 JASPAR yes 33585501
chr1 182003181 182003189 BSX JASPAR yes 33585502
chr1 182003181 182003189 EN1 JASPAR yes 33585503
chr1 182003181 182003189 ISX JASPAR yes 33585504
chr1 182003181 182003189 LHX9 JASPAR yes 33585505
chr1 182003181 182003189 MSX1 JASPAR yes 33585506
chr1 182003181 182003189 MSX2 JASPAR yes 33585507
chr1 182003181 182003189 PRRX1 JASPAR yes 33585508
chr1 182003181 182003189 RAX2 JASPAR yes 33585509
chr1 182003181 182003189 SHOX JASPAR yes 33585510
Genes associated with rs540900979[chr1:182003185], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More