EnhancerDB
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  3. rs541394856[chr10:90598679]
Enhancers that have rs541394856[chr10:90598679]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr10 90591585 90603315 enh50539
Stomach Pancreas (Panc1) Large Intestine Lung (A549)
chr10 90598595 90599037 vista8238
VISTA
Transcript factors that have rs541394856[chr10:90598679]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr10 90598460 90598771 ZNF143 GTRD no Epithelial (MCF-7) 107930167
chr10 90598540 90598812 ZNF143 GTRD no Epithelial (MCF-7) 107930168
chr10 90598553 90598823 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107930169
chr10 90598583 90598827 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107930170
chr10 90598610 90598840 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107930171
chr10 90598666 90598684 NR3C1 JASPAR yes 21129998
chr10 90598666 90598684 NR3C1 JASPAR yes 128967548
chr10 90598677 90598696 CTCF JASPAR yes 21130000
chr10 90598677 90598696 CTCF JASPAR yes 128967550
chr10 90598678 90598693 ZIC3 JASPAR yes 21130001
chr10 90598678 90598693 ZIC4 JASPAR yes 21130002
chr10 90598678 90598693 ZIC3 JASPAR yes 128967551
chr10 90598678 90598693 ZIC4 JASPAR yes 128967552
chr10 90598679 90598693 ZIC1 JASPAR yes 21130003
chr10 90598679 90598693 ZIC1 JASPAR yes 128967553
Genes associated with rs541394856[chr10:90598679], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More