EnhancerDB
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  3. rs541757946[chr1:116852595]
Enhancers that have rs541757946[chr1:116852595]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 116846225 116879811 enh580
Bone Marrow (K562) Brain (SK-N-MC) Liver Blood (Karpas-422) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs541757946[chr1:116852595]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 116852012 116853003 ZNF143 GTRD no Epithelial (MCF-7) 21331954
chr1 116852038 116854512 ZNF143 GTRD no Epithelial (MCF-7) 21331955
chr1 116852111 116853328 ZNF274 GTRD no Bone Marrow (K562) 21331956
chr1 116852129 116853328 ZNF274 GTRD no Bone Marrow (K562) 21331957
chr1 116852222 116855719 ZNF143 GTRD no Epithelial (MCF-7) 21331958
chr1 116852241 116853247 ZNF143 GTRD no Epithelial (MCF-7) 21331959
chr1 116852458 116856181 ZNF274 GTRD no Cervix (HeLa-S3) 21331960
chr1 116852589 116852604 HNF1A JASPAR yes 31792568
chr1 116852594 116852608 POU4F1 JASPAR yes 31792569
Genes associated with rs541757946[chr1:116852595], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More