EnhancerDB
  1. Home
  2. SNP
  3. rs542316546[chr19:3504559]
Enhancers that have rs542316546[chr19:3504559]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3503817 3522715 enh4965
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Brain (SK-N-SH) Prostate (RWPE1) Blood (T-cell) Astrocyte Bone (Osteoblast) Colon (HCT116) Adrenal Blood (Karpas-422) Pancreas Thymus Epithelial (MCF-7)
Transcript factors that have rs542316546[chr19:3504559]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3504550 3504559 SNAI2 JASPAR yes 112135186
chr19 3504550 3504560 ID4 JASPAR yes 112135187
chr19 3504550 3504560 TCF3 JASPAR yes 112135188
chr19 3504550 3504560 TCF4 JASPAR yes 112135189
chr19 3504552 3504561 ZEB1 JASPAR yes 112135190
Genes associated with rs542316546[chr19:3504559], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More