EnhancerDB
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  3. rs542353223[chr12:52559257]
Enhancers that have rs542353223[chr12:52559257]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 52554925 52561655 enh14725
Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Esophagus Placenta Colon (HCT116) Pancreas (Panc1) Lung (PC-9) Pancreas Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs542353223[chr12:52559257]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 52558496 52559258 ZNF143 GTRD no Epithelial (MCF-7) 21546573
chr12 52559167 52559435 TCF7L2 GTRD no Colon (HCT116) 21546574
chr12 52559167 52559435 TCF7L2 GTRD no Colon (HCT116) 108033424
chr12 52559248 52559263 AR JASPAR yes 120924367
Genes associated with rs542353223[chr12:52559257], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More