EnhancerDB
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  3. rs542413538[chr1:200304451]
Enhancers that have rs542413538[chr1:200304451]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 200297972 200315295 enh868
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-MC) Prostate (RWPE1) Astrocyte Placenta Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Epithelial (MCF-7)
Transcript factors that have rs542413538[chr1:200304451]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 200304322 200305154 MEF2B GTRD no Blood (Karpas-422) 21363088
chr1 200304440 200304453 DUXA JASPAR yes 34435931
chr1 200304441 200304452 PHOX2A JASPAR yes 34435932
chr1 200304441 200304452 PROP1 JASPAR yes 34435933
chr1 200304444 200304459 RUNX2 JASPAR yes 34435934
Genes associated with rs542413538[chr1:200304451], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More