EnhancerDB
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  3. rs542659539[chr17:38267103]
Enhancers that have rs542659539[chr17:38267103]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 38259185 38273195 enh4407
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Blood (Karpas-422) Embryonic Stem Cell Line (H1-hESC) Pancreas Blood (T-cell) Epithelial (MCF-7) Kidney Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Neural Stem Cells (H9) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs542659539[chr17:38267103]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 38266679 38267350 ZNF143 GTRD no Epithelial (MCF-7) 21753262
chr17 38266954 38267786 ZNF143 GTRD no Epithelial (MCF-7) 21753265
chr17 38267020 38267662 ZNF143 GTRD no Epithelial (MCF-7) 21753266
chr17 38267045 38267648 ZNF143 GTRD no Epithelial (MCF-7) 21753267
chr17 38267094 38267108 TLX1 JASPAR yes 54193892
chr17 38267101 38267120 PAX5 JASPAR yes 54193893
Genes associated with rs542659539[chr17:38267103], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More