EnhancerDB
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  3. rs542684023[chr1:42354721]
Enhancers that have rs542684023[chr1:42354721]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 42354446 42370305 enh11796
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Blood (T-cell) Astrocyte Bone (Osteoblast) Stomach Placenta Colon (HCT116) Peripheral Blood (MM.1S) Muscle (Myoblast) Pancreas Spleen Muscle (Myotube) Thymus Heart
Transcript factors that have rs542684023[chr1:42354721]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 42354460 42354937 TCF7L2 GTRD no Colon (HCT116) 21325361
chr1 42354705 42354725 RREB1 JASPAR yes 28434016
chr1 42354707 42354727 RREB1 JASPAR yes 28434017
chr1 42354709 42354729 RREB1 JASPAR yes 28434018
chr1 42354711 42354731 RREB1 JASPAR yes 28434019
chr1 42354714 42354734 RREB1 JASPAR yes 28434020
chr1 42354716 42354736 RREB1 JASPAR yes 28434021
chr1 42354717 42354732 RUNX2 JASPAR yes 28434022
chr1 42354718 42354738 RREB1 JASPAR yes 28434023
chr1 42354721 42354741 RREB1 JASPAR yes 28434024
Genes associated with rs542684023[chr1:42354721], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More