EnhancerDB
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  3. rs546672509[chr16:85417999]
Enhancers that have rs546672509[chr16:85417999]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85390172 85421515 enh16868
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-MC) Large Intestine Brain (SK-N-SH) Esophagus Astrocyte Bone (Osteoblast) Stomach Muscle (A673) Placenta Thyroid Lung (PC-9) Pancreas Muscle (Myotube) Heart
Transcript factors that have rs546672509[chr16:85417999]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85416227 85418013 ZNF143 GTRD no Epithelial (MCF-7) 21724596
chr16 85416815 85425751 ZNF143 GTRD no Epithelial (MCF-7) 21724644
chr16 85416815 85425751 ZNF143 GTRD no Epithelial (MCF-7) 21724645
chr16 85416815 85425751 ZNF143 GTRD no Epithelial (MCF-7) 108214247
chr16 85416815 85425751 ZNF143 GTRD no Epithelial (MCF-7) 108214248
chr16 85417977 85421817 ZNF143 GTRD no Epithelial (MCF-7) 21724655
chr16 85417977 85421817 ZNF143 GTRD no Epithelial (MCF-7) 108214249
chr16 85417991 85418006 ESR2 JASPAR yes 12055084
chr16 85417996 85418009 NR2F1 JASPAR yes 12055085
chr16 85417999 85418007 NR4A2 JASPAR yes 12055086
Genes associated with rs546672509[chr16:85417999], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More